Breakfast Egg Muffins Recipe (Egg Cups) (2024)

By Laura

Posted May 01, 2021, Updated Feb 29, 2024

5 from 15 votes

6 Comments

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This egg muffins recipe is a delicious, healthy, low-carb, make-ahead breakfast that’s freezer-friendly. Egg cups are easy to make with only 8 ingredients (including eggs, veggies, cheese, and spices) and are customizable!

Breakfast Egg Muffins Recipe (Egg Cups) (2)

These egg muffs are a delicious healthy breakfast recipe that’s perfect for meal prep (just like these breakfast egg sandwiches)! This simple, straightforward egg muffin recipe is made with with bacon, eggs, vegetables and cheese.

No extras (like milk, bread, potatoes, etc.). Just a bunch of protein and nutrients to start the day right!

Because eggs are so healthy and versatile they can be enjoyed for breakfast lunch and dinner! We often make egg muffins, egg casserole, this amazing omelette recipe, and this homemade frittata for healthy meals.

Breakfast Egg Muffins Recipe (Egg Cups) (3)

Egg Muffins: Ingredients & Substitutions

These egg muffins are highly customizable to your specific tastes! Here are some notes about the ingredients.

Breakfast Egg Muffins Recipe (Egg Cups) (4)
  • Bacon. Turkey bacon can be used in place of regular bacon. However, because of the lower fat content, you will need to add 1 Tablespoon olive oil to the fry pan when you add the veggies to cook them well. You can also use crumbled breakfast sausage in place of bacon with equally delicious results! If you wish to leave out the bacon and make this vegetarian, use 2 TBS olive oil to sauté the vegetables.
  • Minced Garlic.Garlic powder can be used in place of minced garlic, just add it with the rest of the spices.
  • Onion.I usually use a sweet, white onion. Any variety works well: red onion, yellow onion, green onions, etc.
  • Vegetables.Choose your favorite veggies! Bell peppers, broccoli, shredded zucchini, carrots, etc.
  • Dijon mustard.Any mustard variety works well in these egg muffins!
  • Eggs.there is no substituions for eggs in these breakfast egg cups.
  • Cheddar Cheese.I recommend an extra sharp cheddar cheese for the best flavor! Other cheeses that taste great in this egg muffin recipe are: Colby jack, Swiss cheese, pepper jack (for a spicy flavor) and mozzarella!
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How to Make Egg Muffins

This egg muffin recipe is really easy to make, as always we’ll walk through the process step by step, and don’t forget to watch the video!

Cook the bacon, onion and garlic

The first step in making these egg muffin cups is to sauté the bacon, onion and garlic over medium heat until the bacon just begins to brown. Be sure to stir every few minutes.

Note:For a vegetarian version (without bacon), simply add 2 TBS olive oil to the pan and sauté the onions and garlic together until the onions are soft, then add the rest of the veggies!

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Add veggies, cover and cook

Once the bacon just begins to brown, add vegetables, cover and cook for 5-10 minutes or until the veggies are soft and bacon is browned, stirring occasionally.

Note:If you use a variety of vegetables that cook at different speeds, make sure to handle that accordingly. For example, carrots cook faster than zucchini, so I would add the carrots and cook them until they become soft, then add zucchini.

Cool

Remove the pan from the heat and let the veggie/bacon mixture cool while you finish making the egg muffins recipe.

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Combine Eggs & Spices

While the bacon/veggie mixture is cooling, whisk the eggs. Then add mustard, salt, pepper and paprika to the beaten eggs and whisk to combine.

Next, add the cooled bacon/veggie mixture to the beaten eggs and stir until the mixture is uniform throughout. Then add the cheese!

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Bake

Fill each well of the prepared muffin tin ¾ full with egg mixture. Be careful not overfill the wells, because these egg muffins rise and will overflow if they are filled too much!

Bake in preheated oven for 25-30 minutes, or until tops are set and slightly browned and spring back when lightly pressed.

Cool

Let the egg cups cool for 5 minutes, then release them from the pan using a spoon or sharp knife, and serve warm.

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Serve

Serve these egg muffins with your favorite breakfast recipes, I especially love serving them with crispy potatoes and fruit salad. Or, if serving for dinner a nice side salad goes very well with egg muffins!

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Egg Cups Recipe FAQs

How do you store egg muffins?

Store these egg muffins in an airtight container in the refrigerator for up to 5 days,

How do you freeze egg muffins?

To freeze, simply place the egg muffins in a freezer-friendly, airtight container and freeze for up to 2 months. To thaw, transfer the egg muffins to the refrigerator and let thaw overnight. Or reheat in the microwave for 60 seconds per muffin.

How do you keep egg muffins from collapsing in the middle?

Follow this egg muffin recipe and you won’t have any sinking middles! Make sure you don’t over-whisk the ingredients, which creates air bubbles that could cause sinking.

Will egg muffins stick to paper liners?

In my experience, yes. That’s why I recommend greasing your muffin in well. They bake up nice and hearty so they are easy to remove if the pan is properly greased.

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If you make and love our recipes, it would mean so much to me if you would leave a comment and rating! And don’t forget to follow along with us on Instagram, Pinterest, Facebook, and Youtube – be sure to tag @joyfoodsunshine and use the hashtag #joyfoodsunshine so we can your creations!

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Breakfast Egg Muffins Recipe (Egg Cups) (13)

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Breakfast Egg Muffins Recipe (Egg Cups)

Laura

This egg muffins recipe is a delicious, healthy, low-carb, make-ahead breakfast that's freezer-friendly. Egg cups are easy to make with only 8 ingredients (including eggs, veggies, cheese, and spices) and are customizable!

5 from 15 votes

Course Breakfast, brunch, lunch, Main Course

Cuisine American

Servings 14 Muffins

Calories 119

Prep Time15 minutes minutes

Cook Time30 minutes minutes

Total Time45 minutes minutes

Ingredients

Instructions

  • Preheat oven to 350 degrees F. Grease a standard 12-cup muffin tin, set aside.

  • In a large skillet, over medium heat, cook diced bacon until it just starts becomes soft.

  • Add minced garlic and onion and cook until bacon begins to brown.

  • Add vegetables, cover and cook for 5-10 minutes or until the veggies are soft and bacon is browned, stirring occasionally.

  • Remove from heat and let cool.

  • In a medium bowl, whisk together eggs.

  • Add mustard, sea salt, pepper and paprika and whisk to combine.

  • Add cooled bacon/veggie mixture to the beaten eggs and stir to combine.

  • Add cheese. Stir to combine.

  • Fill each well of the prepared muffin tin ¾ full with egg mixture. Do not overfill! These egg muffins rise and will overflow if the wells are filled too much!

  • Bake in preheated oven for 25-30 minutes, or until tops are set and slightly browned.

  • Cool for 5 minutes and serve warm.

Video

Notes

Ingredient Substitutions

  • Bacon. Turkey bacon can be used in place of regular bacon. However, because of the lower fat content, add 1 Tablespoon olive oil to the fry pan when you add the veggies to cook them well. You can also use crumbled breakfast sausage in place of bacon with equally delicious results! If you wish to leave out the bacon and make this vegetarian, use 2 Tablespoons olive oil to sauté the vegetables.
  • Minced Garlic.Garlic powder can be used in place of minced garlic, just add it with the rest of the spices.
  • Onion.I usually use a sweet, white onion. Any variety works well: red onion, yellow onion, green onions, etc.
  • Vegetables.Choose your favorite veggies! Bell peppers, broccoli, shredded zucchini, carrots, etc.
  • Dijon mustard.Any mustard variety works well in these egg muffins!
  • Eggs.there is no substituions for eggs in these breakfast egg cups.
  • Cheddar Cheese.I recommend an extra sharp cheddar cheese for the best flavor! Other cheeses that taste great in this egg muffin recipe are: Colby jack, Swiss cheese, pepper jack (for a spicy flavor) and mozzarella!

Store/Freeze

Store these egg muffins in an airtight container in the refrigerator for up to 5 days, or in the freezer for up to 2 months.

To freeze, simply place the egg muffins in a freezer-friendly, airtight container and freeze for up to 2 months. To thaw, transfer the egg muffins to the refrigerator and let thaw overnight. Or reheat in the microwave for 60 seconds per muffin.

Nutrition

Serving: 1muffin | Calories: 119kcal | Carbohydrates: 2g | Protein: 8g | Fat: 9g | Saturated Fat: 4g | Trans Fat: 1g | Cholesterol: 153mg | Sodium: 233mg | Potassium: 102mg | Fiber: 1g | Sugar: 1g | Vitamin A: 325IU | Vitamin C: 5mg | Calcium: 84mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Did you enjoy this recipe? Have a question? Leave a comment below!

BReakfast Recipes

Egg Casserole (Egg Bake)

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Crispy Oven Roasted Potatoes

Breakfast Egg Sandwiches

Omelette Recipe

Best Quiche Recipe

Breakfast Egg Muffins Recipe (Egg Cups) (2024)

FAQs

How do you make egg muffin cups not stick? ›

You can either spray a 12-capacity NON-STICK muffin tray with a light coating of non-stick oil spray, or line each cup with paper liners. Personally I prefer spraying them because I'm, not a huge fan to paper sticking to my frittatas.

Why are my egg muffins soggy? ›

If your egg muffins are soggy, you likely used a lot of veggies with high water content. Next time, saute the veggies before adding them to the egg cups to remove the excess moisture. Reheat Like a Champ.

Can I use cupcake liners for egg muffins? ›

Of course you can use your muffin tin to bake these but one thing that makes these really easy, from preparation to clean up, are THESE (<affiliate) parchment paper cupcake wrappers that I found. Note: I would NOT recommend making these using regular cupcake wrappers. The parchment paper wrappers are worth it.

How do you keep egg muffins from collapsing? ›

All-purpose flour and baking powder – The secret ingredients! They help the egg muffins create a light and puffy–yet stable–structure as they bake. Without them, the egg muffins will collapse inside the muffin cups. Feta cheese – For rich, salty, tangy flavor.

What liners are best for egg muffins? ›

Alternatively, you could divide the filling between the muffin liners/tin and then pour over the egg mixture. Divide mixture evenly: Between 12 muffin tin openings until they're ¾ full (lined with parchment paper liners – or use a silicone muffin pan) and bake for around 20 minutes at 350F/180C.

Should muffin cups be greased? ›

Muffins are great, but it's frustrating when they get stuck in the pan. The trick to preventing muffins from sticking to the muffin tins is to grease each muffin cup thoroughly.

How do you keep muffins moist and fluffy? ›

How to Make Homemade Muffins Moist: Our Top Tips
  1. Tips to Make Homemade Muffins Moist.
  2. Keep Wet and Dry Ingredients Separately.
  3. Add All Flavorings Last.
  4. Consider Paper Liners.
  5. Don't Overfill the Muffin Cups.
  6. Check the Temperature of Your Oven.
  7. Test if Muffins Are Fully Cooked.
  8. Top Your Muffins with Flavor.
Aug 9, 2021

What makes muffins more moist? ›

The right amount of butter or oil, or a combination of both, is important to get a moist muffin. This fat is essential for producing a beautifully moist muffin with a tender crumb - so don't reduce the amount stated in the recipe.

Why do my egg muffins go flat? ›

Why Are My Egg Muffins Flat? If your egg cups are deflating a bit when you take them out of the oven, don't worry. This is super normal. The air bubbles in the mixture expand in the oven and then deflate as they cool.

Why are my egg muffins hollow? ›

As the eggs heat up, air bubbles are formed and expand. The eggs don't have enough structure to hold the air bubbles so they deflate as they cool.

What is the best egg substitute for muffins? ›

Both yogurt and buttermilk are good substitutes for eggs. It's best to use plain yogurt, as flavored and sweetened varieties may alter the flavor of your recipe. You can use 1/4 cup (60 g) of yogurt or buttermilk for each egg that needs to be replaced. This substitution works best for muffins, cakes, and cupcakes.

Why are my egg bites spongy? ›

Why are my egg bites spongy? To ensure that your copycat Starbucks egg bites have the right texture, make sure you don't overmix the eggs and bake them for the proper cooking time at a low temperature (325° Fahrenheit).

Why are my egg cups rubbery? ›

Recipe FAQs

If your egg muffins are rubbery they may be overcooked and left in the oven for too long. They don't need to be baked too long or else they will dry out and have a rubbery texture. Why did my egg cups deflate? This is normal to have the egg cups sink or deflate as they are cooling.

How to get egg cups not to stick? ›

Preheat the oven to 350ºF and grease a non-stick muffin pan (affiliate link). Alternatively, you can use paper liners or silicone liners to prevent sticking. You'll also need a rimmed baking sheet that the muffin pan fits into.

What does too much egg do to muffins? ›

If there isn't enough egg, your batter or dough may not be able to hold its structure or could end up overly dry or dense. On the other hand, if there is too much egg, your baked goods could lose their shape due to excess liquid, or have a rubbery (or even overly cakey) texture depending on the recipe.

How to keep egg casserole from sticking? ›

How to Keep Those Eggs from Sticking
  1. Use butter or coconut oil! Before I researched this, I was always coating my pans with cooking spray. ...
  2. Use the right kind of pan. Non-stick pans are not always non-stick and there are some safety concerns about non-stick coating. ...
  3. Get the temperature right.

What can I use so my muffins don't stick? ›

The nonstick coating is a game-changer, especially for those muffin tops, but it's still a good idea to grease any baking pan for extra reassurance. You can opt either for a cooking spray (here's our favorite one for baking) or melted butter, applied with a pastry brush.

Do eggs stick to silicone muffin cups? ›

We oohed and aahed as we popped the bites so easily out of the molds, no eggy residue in sight. Now our one silicone pan works triple shifts.

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